MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.2782733616495611
cnr4.62258108180231
efc0.5787106863163134
fber87.0611572265625
fwhmavg4.068133333333333
fwhmx3.89879
fwhmy4.1989
fwhmz4.10671
icvscsf0.19597097098232344
icvsgm0.4709712739520816
icvswm0.33305775506559493
inumed1.0685499906539917
inurange0.3532015323638915
qi10.0
qi20.0008076463259202087
rpvecsf25.588258464339482
rpvegm12.164901261622134
rpvewm19.669781356182597
sizex180
sizey256
sizez256
snrcsf2.4950839677355154
snrgm10.428997626785982
snrtotal10.421408065888514
snrwm18.340142603144045
snrdcsf12.821834989349465
snrdgm26.252123958656853
snrdtotal27.153317701020836
snrdwm42.38599415505619
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk1.888413160709426
summarybgmad15.456534385681152
summarybgmean55.515342712402344
summarybgmedian53.698917388916016
summarybgn3099615.0
summarybgp0532.48454399108887
summarybgp9584.93394622802727
summarybgstdv16.75379180908203
summarycsfk-0.09845832906184837
summarycsfmad137.41566467285156
summarycsfmean302.71466064453125
summarycsfmedian302.5036315917969
summarycsfn10609.0
summarycsfp05115.03782653808594
summarycsfp95493.1301147460938
summarycsfstdv121.23414611816406
summarygmk0.3056509299741186
summarygmmad56.37852096557617
summarygmmean621.7737426757812
summarygmmedian619.3624267578125
summarygmn39223.0
summarygmp05527.8537109375
summarygmp95724.74013671875
summarygmstdv59.387733459472656
summarywmk0.7814409546881325
summarywmmad49.544559478759766
summarywmmean999.2518920898438
summarywmmedian1000.0064086914062
summarywmn176729.0
summarywmp05906.9926635742188
summarywmp951086.3060791015625
summarywmstdv54.52539825439453
tpmoverlapcsf0.20403006672859192
tpmoverlapgm0.5331375002861023
tpmoverlapwm0.545097827911377
wm2max0.6050827185604343

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sum34c3558e33715acd924bad383ee0c20f
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.