MRIQC: individual T1w report

Summary

Subject ID: 024_ControlPre.
Date and time: 2018-05-07, 01:31.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.2782733616495611
cnr			4.62258108180231
efc			0.5787106863163134
fber			87.0611572265625
fwhm	avg		4.068133333333333
fwhm	x		3.89879
fwhm	y		4.1989
fwhm	z		4.10671
icvs	csf		0.19597097098232344
icvs	gm		0.4709712739520816
icvs	wm		0.33305775506559493
inu	med		1.0685499906539917
inu	range		0.3532015323638915
qi	1		0.0
qi	2		0.0008076463259202087
rpve	csf		25.588258464339482
rpve	gm		12.164901261622134
rpve	wm		19.669781356182597
size	x		180
size	y		256
size	z		256
snr	csf		2.4950839677355154
snr	gm		10.428997626785982
snr	total		10.421408065888514
snr	wm		18.340142603144045
snrd	csf		12.821834989349465
snrd	gm		26.252123958656853
snrd	total		27.153317701020836
snrd	wm		42.38599415505619
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	1.888413160709426
summary	bg	mad	15.456534385681152
summary	bg	mean	55.515342712402344
summary	bg	median	53.698917388916016
summary	bg	n	3099615.0
summary	bg	p05	32.48454399108887
summary	bg	p95	84.93394622802727
summary	bg	stdv	16.75379180908203
summary	csf	k	-0.09845832906184837
summary	csf	mad	137.41566467285156
summary	csf	mean	302.71466064453125
summary	csf	median	302.5036315917969
summary	csf	n	10609.0
summary	csf	p05	115.03782653808594
summary	csf	p95	493.1301147460938
summary	csf	stdv	121.23414611816406
summary	gm	k	0.3056509299741186
summary	gm	mad	56.37852096557617
summary	gm	mean	621.7737426757812
summary	gm	median	619.3624267578125
summary	gm	n	39223.0
summary	gm	p05	527.8537109375
summary	gm	p95	724.74013671875
summary	gm	stdv	59.387733459472656
summary	wm	k	0.7814409546881325
summary	wm	mad	49.544559478759766
summary	wm	mean	999.2518920898438
summary	wm	median	1000.0064086914062
summary	wm	n	176729.0
summary	wm	p05	906.9926635742188
summary	wm	p95	1086.3060791015625
summary	wm	stdv	54.52539825439453
tpm	overlap	csf	0.20403006672859192
tpm	overlap	gm	0.5331375002861023
tpm	overlap	wm	0.545097827911377
wm2max			0.6050827185604343

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	34c3558e33715acd924bad383ee0c20f
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.